Biological Databases¶

The following biological databases can be used for training and evaluating knowledge graph embeddings. This is done by using the Bio2BEL universe.

Source DOI
ADEPTUS adeptus_zenodo
ComPath compath_zenodo
DrugBank Zenodo DOI
ExPASy ExPASy Zenodo DOI
HIPPIE HIPPIE Zenodo DOI
HSDN hsdn_zenodo
KEGG KEGG Zenodo DOI
miRTarBase Zenodo DOI
MSigDB MSigDB Zenodo DOI
Reactome Reactome Zenodo DOI
SIDER SIDER Zenodo DOI
InterPro InterPro Zenodo DOI
WikiPathways WikiPathways Zenodo DOI