Biological Databases

The following biological databases can be used for training and evaluating knowledge graph embeddings. This is done by using the Bio2BEL universe.

Source

DOI

ADEPTUS

adeptus_zenodo

ComPath

compath_zenodo

DrugBank

Zenodo DOI

ExPASy

ExPASy Zenodo DOI

HIPPIE

HIPPIE Zenodo DOI

HSDN

hsdn_zenodo

KEGG

KEGG Zenodo DOI

miRTarBase

Zenodo DOI

MSigDB

MSigDB Zenodo DOI

Reactome

Reactome Zenodo DOI

SIDER

SIDER Zenodo DOI

InterPro

InterPro Zenodo DOI

WikiPathways

WikiPathways Zenodo DOI