OpenBioLink

class OpenBioLink(create_inverse_triples=False, **kwargs)

Bases: pykeen.datasets.base.PackedZipRemoteDataset

The OpenBioLink dataset.

OpenBioLink is an open-source, reproducible framework for generating biological knowledge graphs for benchmarking link prediction. It is available on GitHub at https://github.com/openbiolink/openbiolink and published in [breit2020]. There are four available datasets - this class represents the high quality, directed set.

Initialize the OpenBioLink dataset.

Parameters

• create_inverse_triples (bool) – Should inverse triples be created? Defaults to false.

• kwargs – keyword arguments passed to pykeen.datasets.base.PackedZipRemoteDataset.