Source code for pykeen.datasets.biokg

# -*- coding: utf-8 -*-

"""The `BioKG <https://github.com/dsi-bdi/biokg/>`_ dataset.

Get a summary with ``python -m pykeen.datasets.biokg``.
"""

import click
from docdata import parse_docdata
from more_click import verbose_option

from .base import ZipSingleDataset
from ..typing import TorchRandomHint

__all__ = [
    "BioKG",
]

URL = "https://github.com/dsi-bdi/biokg/releases/download/v1.0.0/biokg.zip"


[docs]@parse_docdata class BioKG(ZipSingleDataset): """The BioKG dataset from [walsh2020]_. --- name: BioKG citation: github: dsi-bdi/biokg author: Walsh year: 2019 link: https://doi.org/10.1145/3340531.3412776 single: true statistics: entities: 105524 types: 13 relations: 17 triples: 2067997 """ def __init__( self, create_inverse_triples: bool = False, random_state: TorchRandomHint = 0, **kwargs, ): """Initialize the BioKG dataset from [walsh2020]_. :param create_inverse_triples: Should inverse triples be created? Defaults to false. :param random_state: The random seed to use in splitting the dataset. Defaults to 0. :param kwargs: keyword arguments passed to :class:`pykeen.datasets.base.TarFileSingleDataset`. """ super().__init__( url=URL, relative_path="biokg.links.tsv", create_inverse_triples=create_inverse_triples, random_state=random_state, **kwargs, )
@click.command() @verbose_option def _main(): ds = BioKG() ds.summarize() if __name__ == "__main__": _main()